IL_8JDM_301
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- (PSU)CA(A2M)AGU*AA(PSU)GAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8JDM_301 not in the Motif Atlas
- Homologous match to IL_8P9A_316
- Geometric discrepancy: 0.3044
- The information below is about IL_8P9A_316
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65359.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8JDM|1|D|PSU|3715
8JDM|1|D|C|3716
8JDM|1|D|A|3717
8JDM|1|D|A2M|3718
8JDM|1|D|A|3719
8JDM|1|D|G|3720
8JDM|1|D|U|3721
*
8JDM|1|D|A|3732
8JDM|1|D|A|3733
8JDM|1|D|PSU|3734
8JDM|1|D|G|3735
8JDM|1|D|A|3736
8JDM|1|D|A|3737
8JDM|1|D|G|3738
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain G
- 60S ribosomal protein L8
- Chain n
- 60S ribosomal protein L36
Coloring options: