IL_8JDM_310

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

AUC*(OMG)U(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_310 not in the Motif Atlas

Homologous match to IL_8P9A_343

Geometric discrepancy: 0.1446

The information below is about IL_8P9A_343

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

8JDM|1|D|A|4590
8JDM|1|D|U|4591
8JDM|1|D|C|4592
*
8JDM|1|D|OMG|4618
8JDM|1|D|U|4619
8JDM|1|D|OMU|4620

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain a

60S ribosomal protein L23