IL_8JDM_317

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAUAACUGU*AG(A2M)GCUAA(OMU)A(OMC)

Length

21 nucleotides

Bulged bases

8JDM|1|w|OMU|172

QA status

Modified nucleotides: A2M, OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|w|G|145
8JDM|1|w|G|146
8JDM|1|w|A|147
8JDM|1|w|U|148
8JDM|1|w|A|149
8JDM|1|w|A|150
8JDM|1|w|C|151
8JDM|1|w|U|152
8JDM|1|w|G|153
8JDM|1|w|U|154
*
8JDM|1|w|A|164
8JDM|1|w|G|165
8JDM|1|w|A2M|166
8JDM|1|w|G|167
8JDM|1|w|C|168
8JDM|1|w|U|169
8JDM|1|w|A|170
8JDM|1|w|A|171
8JDM|1|w|OMU|172
8JDM|1|w|A|173
8JDM|1|w|OMC|174

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S6

Chain AK

40S ribosomal protein S24