IL_8JDM_332

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UC(2MG)*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JDM_332 not in the Motif Atlas

Homologous match to IL_7KJT_001

Geometric discrepancy: 0.3414

The information below is about IL_7KJT_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8JDM|1|B|U|4
8JDM|1|B|C|5
8JDM|1|B|2MG|6
*
8JDM|1|B|C|67
8JDM|1|B|G|68
8JDM|1|B|A|69

Current chains

Chain B

tRNA (Tyr)

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA