IL_8JSH_054

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_054 not in the Motif Atlas

Geometric match to IL_5TBW_035

Geometric discrepancy: 0.3782

The information below is about IL_5TBW_035

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8JSH|1|g|U|1440
8JSH|1|g|A|1441
8JSH|1|g|G|1442
*
8JSH|1|g|C|1460
8JSH|1|g|G|1461

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20