IL_8JSH_068

3D structure

PDB id

8JSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S-body-IF3 complex from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUAAC*GAGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8JSH_068 not in the Motif Atlas

Geometric match to IL_5J7L_353

Geometric discrepancy: 0.351

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8JSH|1|g|U|1444
8JSH|1|g|U|1445
8JSH|1|g|A|1446
8JSH|1|g|A|1447
8JSH|1|g|C|1448
*
8JSH|1|g|G|1455
8JSH|1|g|A|1456
8JSH|1|g|G|1457
8JSH|1|g|G|1458

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain 3

30S ribosomal protein S20