IL_8K27_001

3D structure

PDB id

8K27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

ICP1 Csy-dsDNA complex (partial duplex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGCC,GGCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K27_001 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.2918

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

8K27|1|P|A|39
8K27|1|P|G|40
8K27|1|P|C|41
8K27|1|P|C|42
*
8K27|1|P|G|48
8K27|1|P|G|49
8K27|1|P|C|50
8K27|1|P|U|51

Current chains

Chain P

RNA (60-MER)

Nearby chains

Chain I

Csy4