IL_8K27_002

3D structure

PDB id

8K27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

ICP1 Csy-dsDNA complex (partial duplex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAACCC*GGGTTG

Length

12 nucleotides

Bulged bases

8K27|1|P|C|6, 8K27|1|Q|DG|27

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K27|1|P|C|3
8K27|1|P|A|4
8K27|1|P|A|5
8K27|1|P|C|6
8K27|1|P|C|7
8K27|1|P|C|8
*
8K27|1|Q|DG|25
8K27|1|Q|DG|26
8K27|1|Q|DG|27
8K27|1|Q|DT|28
8K27|1|Q|DT|29
8K27|1|Q|DG|30

Current chains

Chain P

RNA (60-MER)

Chain Q

DNA (49-MER)

Nearby chains

Chain C

Csy3

Chain D

Csy3

Chain E

Csy3