IL_8K2A_020
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2A_020 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1349
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8K2A|1|L1|A|636
8K2A|1|L1|U|637
8K2A|1|L1|A|638
8K2A|1|L1|A|639
8K2A|1|L1|G|640
8K2A|1|L1|U|641
8K2A|1|L1|A|642
8K2A|1|L1|A|643
*
8K2A|1|L1|U|1004
8K2A|1|L1|G|1005
8K2A|1|L1|A|1006
8K2A|1|L1|A|1007
8K2A|1|L1|A|1008
8K2A|1|L1|U|1009
8K2A|1|L1|U|1010
Current chains
- Chain L1
- 16S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL4m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LV
- 39S ribosomal protein L22, mitochondrial
- Chain Lf
- Large ribosomal subunit protein bL32m
Coloring options: