IL_8K2A_067

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGUCAAUUU*AUUA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|S1|U|229
8K2A|1|S1|G|230
8K2A|1|S1|G|231
8K2A|1|S1|U|232
8K2A|1|S1|C|233
8K2A|1|S1|A|234
8K2A|1|S1|A|235
8K2A|1|S1|U|236
8K2A|1|S1|U|237
8K2A|1|S1|U|238
*
8K2A|1|S1|A|263
8K2A|1|S1|U|264
8K2A|1|S1|U|265
8K2A|1|S1|A|266

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS5m

Chain SL

Small ribosomal subunit protein uS12m

Chain SS

Small ribosomal subunit protein mS40

Chain Si

Small ribosomal subunit protein mS33