IL_8K2A_069
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 8K2A|1|S1|A|291
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2A_069 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.1286
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
8K2A|1|S1|C|288
8K2A|1|S1|G|289
8K2A|1|S1|U|290
8K2A|1|S1|A|291
8K2A|1|S1|A|292
8K2A|1|S1|A|293
8K2A|1|S1|G|294
*
8K2A|1|S1|C|486
8K2A|1|S1|G|487
Current chains
- Chain S1
- 12S rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein uS5m
- Chain SL
- Small ribosomal subunit protein uS12m
- Chain SQ
- Small ribosomal subunit protein uS17m
- Chain Sm
- Small ribosomal subunit protein mS37
- Chain Sn
- Small ribosomal subunit protein mS38
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