IL_8K2A_071

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAAACU*ACACAAA

Length

14 nucleotides

Bulged bases

8K2A|1|S1|C|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|S1|U|327
8K2A|1|S1|A|328
8K2A|1|S1|A|329
8K2A|1|S1|A|330
8K2A|1|S1|A|331
8K2A|1|S1|C|332
8K2A|1|S1|U|333
*
8K2A|1|S1|A|361
8K2A|1|S1|C|362
8K2A|1|S1|A|363
8K2A|1|S1|C|364
8K2A|1|S1|A|365
8K2A|1|S1|A|366
8K2A|1|S1|A|367

Current chains

Chain S1

12S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m

Chain SF

Small ribosomal subunit protein bS6m

Chain SK

Small ribosomal subunit protein uS11m

Chain ST

Small ribosomal subunit protein bS18m

Chain SW

Small ribosomal subunit protein bS21m