IL_8K2A_076

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2A_076 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1594

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8K2A|1|S1|A|420
8K2A|1|S1|A|421
8K2A|1|S1|A|422
8K2A|1|S1|C|423
8K2A|1|S1|U|424
*
8K2A|1|S1|A|440
8K2A|1|S1|C|441
8K2A|1|S1|U|442
8K2A|1|S1|A|443
8K2A|1|S1|U|444

Current chains

Chain S1

12S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain SK

Small ribosomal subunit protein uS11m

Chain SW

Small ribosomal subunit protein bS21m