IL_8K2A_078

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACACUACG*UAAAACU

Length

16 nucleotides

Bulged bases

8K2A|1|S1|C|496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|S1|A|492
8K2A|1|S1|A|493
8K2A|1|S1|C|494
8K2A|1|S1|A|495
8K2A|1|S1|C|496
8K2A|1|S1|U|497
8K2A|1|S1|A|498
8K2A|1|S1|C|499
8K2A|1|S1|G|500
*
8K2A|1|S1|U|511
8K2A|1|S1|A|512
8K2A|1|S1|A|513
8K2A|1|S1|A|514
8K2A|1|S1|A|515
8K2A|1|S1|C|516
8K2A|1|S1|U|517

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SL

Small ribosomal subunit protein uS12m

Chain SO

Small ribosomal subunit protein uS15m

Chain Sn

Small ribosomal subunit protein mS38