IL_8K2A_081
3D structure
- PDB id
- 8K2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUAUC*GCCCU
- Length
- 10 nucleotides
- Bulged bases
- 8K2A|1|S1|A|541
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K2A_081 not in the Motif Atlas
- Geometric match to IL_1KOG_007
- Geometric discrepancy: 0.1495
- The information below is about IL_1KOG_007
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.14
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
8K2A|1|S1|A|539
8K2A|1|S1|U|540
8K2A|1|S1|A|541
8K2A|1|S1|U|542
8K2A|1|S1|C|543
*
8K2A|1|S1|G|817
8K2A|1|S1|C|818
8K2A|1|S1|C|819
8K2A|1|S1|C|820
8K2A|1|S1|U|821
Current chains
- Chain S1
- 12S rRNA
Nearby chains
- Chain SG
- Small ribosomal subunit protein uS7m
- Chain SI
- Small ribosomal subunit protein uS9m
- Chain Sm
- Small ribosomal subunit protein mS37
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