IL_8K2A_097

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GCA

Length

5 nucleotides

Bulged bases

8K2A|1|S1|C|892

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2A_097 not in the Motif Atlas

Geometric match to IL_3SN2_002

Geometric discrepancy: 0.353

The information below is about IL_3SN2_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

8K2A|1|S1|U|863
8K2A|1|S1|C|864
*
8K2A|1|S1|G|891
8K2A|1|S1|C|892
8K2A|1|S1|A|893

Current chains

Chain S1

12S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LN

Large ribosomal subunit protein uL14m

Chain Sj

Small ribosomal subunit protein mS34

Chain Sn

Small ribosomal subunit protein mS38