IL_8K2C_027

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGCGGCCCGG*UCCCCC

Length

16 nucleotides

Bulged bases

8K2C|1|L5|C|501, 8K2C|1|L5|C|502, 8K2C|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|G|496
8K2C|1|L5|G|497
8K2C|1|L5|C|498
8K2C|1|L5|G|499
8K2C|1|L5|G|500
8K2C|1|L5|C|501
8K2C|1|L5|C|502
8K2C|1|L5|C|503
8K2C|1|L5|G|504
8K2C|1|L5|G|505
*
8K2C|1|L5|U|653
8K2C|1|L5|C|654
8K2C|1|L5|C|655
8K2C|1|L5|C|656
8K2C|1|L5|C|657
8K2C|1|L5|C|658

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18