IL_8K2C_034

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

8K2C|1|L5|A|932, 8K2C|1|L5|C|934, 8K2C|1|L5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|A|732
8K2C|1|L5|A|733
8K2C|1|L5|G|734
8K2C|1|L5|G|735
*
8K2C|1|L5|C|928
8K2C|1|L5|A|929
8K2C|1|L5|G|930
8K2C|1|L5|C|931
8K2C|1|L5|A|932
8K2C|1|L5|G|933
8K2C|1|L5|C|934
8K2C|1|L5|A|935
8K2C|1|L5|C|936
8K2C|1|L5|U|937

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a