IL_8K2C_060

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2C_060 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0759

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8K2C|1|L5|C|1551
8K2C|1|L5|G|1552
8K2C|1|L5|A|1553
8K2C|1|L5|A|1554
8K2C|1|L5|G|1555
*
8K2C|1|L5|U|1572
8K2C|1|L5|G|1573
8K2C|1|L5|G|1574
8K2C|1|L5|A|1575
8K2C|1|L5|G|1576

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a