IL_8K2C_122

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAUGUCAAAGU*AAUGAAGCGC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|L5|G|3710
8K2C|1|L5|A|3711
8K2C|1|L5|A|3712
8K2C|1|L5|U|3713
8K2C|1|L5|G|3714
8K2C|1|L5|U|3715
8K2C|1|L5|C|3716
8K2C|1|L5|A|3717
8K2C|1|L5|A|3718
8K2C|1|L5|A|3719
8K2C|1|L5|G|3720
8K2C|1|L5|U|3721
*
8K2C|1|L5|A|3732
8K2C|1|L5|A|3733
8K2C|1|L5|U|3734
8K2C|1|L5|G|3735
8K2C|1|L5|A|3736
8K2C|1|L5|A|3737
8K2C|1|L5|G|3738
8K2C|1|L5|C|3739
8K2C|1|L5|G|3740
8K2C|1|L5|C|3741

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain S2

Small subunit ribosomal RNA; SSU rRNA