IL_8K2C_167

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2C_167 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.2639

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

8K2C|1|L5|G|4896
8K2C|1|L5|G|4897
8K2C|1|L5|G|4898
*
8K2C|1|L5|C|4922
8K2C|1|L5|C|4923
8K2C|1|L5|C|4924

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14