IL_8K2C_213

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

8K2C|1|S2|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2C_213 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3574

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8K2C|1|S2|G|535
8K2C|1|S2|A|536
8K2C|1|S2|C|537
*
8K2C|1|S2|G|546
8K2C|1|S2|G|547
8K2C|1|S2|C|548
8K2C|1|S2|C|549

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

40S ribosomal protein S30