IL_8K2C_226

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K2C_226 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.1101

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8K2C|1|S2|G|874
8K2C|1|S2|A|875
8K2C|1|S2|C|876
*
8K2C|1|S2|G|910
8K2C|1|S2|C|911
8K2C|1|S2|C|912

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11