IL_8K2C_276

3D structure

PDB id

8K2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCCCGC*GCGGAGCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2C|1|S2|C|1750
8K2C|1|S2|C|1751
8K2C|1|S2|C|1752
8K2C|1|S2|C|1753
8K2C|1|S2|G|1754
8K2C|1|S2|C|1755
*
8K2C|1|S2|G|1777
8K2C|1|S2|C|1778
8K2C|1|S2|G|1779
8K2C|1|S2|G|1780
8K2C|1|S2|A|1781
8K2C|1|S2|G|1782
8K2C|1|S2|C|1783
8K2C|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6