IL_8K3O_017

3D structure

PDB id

8K3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGGG*CCUGA

Length

9 nucleotides

Bulged bases

8K3O|1|A|U|387, 8K3O|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K3O|1|A|U|375
8K3O|1|A|G|376
8K3O|1|A|G|377
8K3O|1|A|G|378
*
8K3O|1|A|C|385
8K3O|1|A|C|386
8K3O|1|A|U|387
8K3O|1|A|G|388
8K3O|1|A|A|389

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16