IL_8K3O_055

3D structure

PDB id

8K3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUG,CAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K3O_055 not in the Motif Atlas

Geometric match to IL_3R1C_011

Geometric discrepancy: 0.106

The information below is about IL_3R1C_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8K3O|1|A|G|1353
8K3O|1|A|U|1354
8K3O|1|A|G|1355
*
8K3O|1|A|C|1367
8K3O|1|A|A|1368
8K3O|1|A|C|1369

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14