IL_8K4E_020

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K4E_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1213

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8K4E|1|A|U|409
8K4E|1|A|G|410
8K4E|1|A|A|411
8K4E|1|A|A|412
8K4E|1|A|G|413
8K4E|1|A|A|414
8K4E|1|A|A|415
8K4E|1|A|G|416
*
8K4E|1|A|U|427
8K4E|1|A|G|428
8K4E|1|A|U|429
8K4E|1|A|A|430
8K4E|1|A|A|431
8K4E|1|A|A|432
8K4E|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4