IL_8K4E_034

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAGAGG*CUGGA

Length

11 nucleotides

Bulged bases

8K4E|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K4E|1|A|U|662
8K4E|1|A|A|663
8K4E|1|A|G|664
8K4E|1|A|A|665
8K4E|1|A|G|666
8K4E|1|A|G|667
*
8K4E|1|A|C|739
8K4E|1|A|U|740
8K4E|1|A|G|741
8K4E|1|A|G|742
8K4E|1|A|A|743

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6, fully modified isoform

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18