IL_8K4E_060

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAA*UUA

Length

7 nucleotides

Bulged bases

8K4E|1|A|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K4E_060 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.2131

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8K4E|1|A|U|30
8K4E|1|A|G|31
8K4E|1|A|A|32
8K4E|1|A|A|33
*
8K4E|1|A|U|551
8K4E|1|A|U|552
8K4E|1|A|A|553

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12