IL_8K82_005
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8K82|1|C1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_005 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0707
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8K82|1|C1|C|31
8K82|1|C1|U|32
8K82|1|C1|G|33
8K82|1|C1|A|34
8K82|1|C1|A|35
8K82|1|C1|C|36
8K82|1|C1|U|37
8K82|1|C1|U|38
*
8K82|1|C1|A|45
8K82|1|C1|U|46
8K82|1|C1|C|47
8K82|1|C1|A|48
8K82|1|C1|A|49
8K82|1|C1|U|50
8K82|1|C1|A|51
8K82|1|C1|A|52
8K82|1|C1|G|53
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lj
- Large ribosomal subunit protein eL37A
- Chain Lo
- Large ribosomal subunit protein eL42A
Coloring options: