IL_8K82_010

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

8K82|1|C1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_010 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.2933

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8K82|1|C1|U|169
8K82|1|C1|G|170
*
8K82|1|C1|U|248
8K82|1|C1|U|249
8K82|1|C1|U|250
8K82|1|C1|G|251
8K82|1|C1|U|252
8K82|1|C1|A|253

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LG

Large ribosomal subunit protein eL8A

Chain LL

Large ribosomal subunit protein eL13A

Chain Lh

Large ribosomal subunit protein uL29A