IL_8K82_011

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_011 not in the Motif Atlas

Geometric match to IL_4WF9_026

Geometric discrepancy: 0.3708

The information below is about IL_4WF9_026

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

8K82|1|C1|U|177
8K82|1|C1|U|178
*
8K82|1|C1|A|238
8K82|1|C1|G|239
8K82|1|C1|U|240
8K82|1|C1|G|241

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain Lh

Large ribosomal subunit protein uL29A

Chain Lj

Large ribosomal subunit protein eL37A