IL_8K82_017
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- 8K82|1|C1|A|440
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_017 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.3494
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8K82|1|C1|C|435
8K82|1|C1|A|436
8K82|1|C1|G|437
8K82|1|C1|A|438
8K82|1|C1|C|439
8K82|1|C1|A|440
8K82|1|C1|G|494
8K82|1|C1|G|495
*
8K82|1|C1|C|618
8K82|1|C1|A|619
8K82|1|C1|U|620
8K82|1|C1|A|621
8K82|1|C1|A|622
8K82|1|C1|U|623
8K82|1|C1|G|624
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LP
- Large ribosomal subunit protein uL22A
- Chain Le
- Large ribosomal subunit protein eL32
- Chain Lf
- Large ribosomal subunit protein eL33A
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