IL_8K82_024

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8K82|1|C1|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_024 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.1068

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8K82|1|C1|C|752
8K82|1|C1|C|753
*
8K82|1|C1|G|779
8K82|1|C1|A|780
8K82|1|C1|G|781

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LQ

Large ribosomal subunit protein eL18A

Chain La

Large ribosomal subunit protein uL15

Chain Lb

Large ribosomal subunit protein eL29