IL_8K82_026

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1322

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8K82|1|C1|C|758
8K82|1|C1|U|759
8K82|1|C1|G|760
8K82|1|C1|A|761
8K82|1|C1|U|762
8K82|1|C1|G|763
*
8K82|1|C1|C|768
8K82|1|C1|G|769
8K82|1|C1|G|770
8K82|1|C1|A|771
8K82|1|C1|U|772
8K82|1|C1|G|773

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13A

Chain La

Large ribosomal subunit protein uL15

Chain Lo

Large ribosomal subunit protein eL42A