IL_8K82_046

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

8K82|1|C1|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_046 not in the Motif Atlas

Geometric match to IL_5TBW_045

Geometric discrepancy: 0.1505

The information below is about IL_5TBW_045

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8K82|1|C1|U|1074
8K82|1|C1|A|1075
8K82|1|C1|C|1076
*
8K82|1|C1|G|1083
8K82|1|C1|A|1084

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29