IL_8K82_048

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_048 not in the Motif Atlas

Homologous match to IL_8C3A_050

Geometric discrepancy: 0.0763

The information below is about IL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8K82|1|C1|U|1123
8K82|1|C1|U|1124
8K82|1|C1|U|1125
*
8K82|1|C1|A|1133
8K82|1|C1|G|1134
8K82|1|C1|A|1135

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain LI

Large ribosomal subunit protein uL16

Chain Lb

Large ribosomal subunit protein eL29