IL_8K82_054
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8K82|1|C1|U|1208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_054 not in the Motif Atlas
- Homologous match to IL_8C3A_056
- Geometric discrepancy: 0.2117
- The information below is about IL_8C3A_056
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8K82|1|C1|G|1207
8K82|1|C1|U|1208
8K82|1|C1|G|1209
*
8K82|1|C1|C|1296
8K82|1|C1|C|1297
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LH
- Large ribosomal subunit protein uL6A
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LS
- Large ribosomal subunit protein eL20A
- Chain Lm
- Ubiquitin-ribosomal protein eL40A fusion protein
Coloring options: