IL_8K82_090

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_090 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.088

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8K82|1|C1|G|2276
8K82|1|C1|C|2277
*
8K82|1|C1|G|2307
8K82|1|C1|C|2308
8K82|1|C1|A|2309
8K82|1|C1|U|2310

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C5

Transfer RNA; tRNA

Chain Ln

Large ribosomal subunit protein eL41A