IL_8K82_095

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8K82|1|C1|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_095 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0831

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8K82|1|C1|G|2412
8K82|1|C1|A|2413
*
8K82|1|C1|U|2807
8K82|1|C1|A|2808
8K82|1|C1|C|2809
8K82|1|C1|C|2810

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C5

Transfer RNA; tRNA

Chain LA

Large ribosomal subunit protein uL2A