IL_8K82_098

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUAGA*UUUAUAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C1|C|2444
8K82|1|C1|A|2445
8K82|1|C1|U|2446
8K82|1|C1|A|2447
8K82|1|C1|G|2448
8K82|1|C1|A|2449
*
8K82|1|C1|U|2497
8K82|1|C1|U|2498
8K82|1|C1|U|2499
8K82|1|C1|A|2500
8K82|1|C1|U|2501
8K82|1|C1|A|2502
8K82|1|C1|G|2503

Current chains

Chain C1

23S rRNA

Nearby chains

Chain Li

Large ribosomal subunit protein eL36A