IL_8K82_102

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

8K82|1|C1|A|2484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C1|G|2466
8K82|1|C1|G|2467
8K82|1|C1|A|2468
8K82|1|C1|G|2469
*
8K82|1|C1|C|2476
8K82|1|C1|G|2477
8K82|1|C1|C|2478
8K82|1|C1|C|2479
8K82|1|C1|A|2480
8K82|1|C1|G|2481
8K82|1|C1|U|2482
8K82|1|C1|G|2483
8K82|1|C1|A|2484
8K82|1|C1|A|2485
8K82|1|C1|A|2486
8K82|1|C1|U|2487
8K82|1|C1|A|2488
8K82|1|C1|C|2489

Current chains

Chain C1

23S rRNA

Nearby chains

Chain L1

Large ribosomal subunit protein uL1A