IL_8K82_103
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 8K82|1|C1|G|2522, 8K82|1|C1|G|2585, 8K82|1|C1|G|2586
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_103 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.1008
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C1|A|2520
8K82|1|C1|U|2521
8K82|1|C1|G|2522
8K82|1|C1|A|2523
8K82|1|C1|A|2524
8K82|1|C1|G|2525
8K82|1|C1|C|2526
*
8K82|1|C1|G|2584
8K82|1|C1|G|2585
8K82|1|C1|G|2586
8K82|1|C1|U|2587
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain C3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain LX
- Large ribosomal subunit protein uL23
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