IL_8K82_104
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- 8K82|1|C1|A|2626
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_104 not in the Motif Atlas
- Homologous match to IL_5TBW_098
- Geometric discrepancy: 0.0873
- The information below is about IL_5TBW_098
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8K82|1|C1|G|2614
8K82|1|C1|G|2615
*
8K82|1|C1|C|2625
8K82|1|C1|A|2626
8K82|1|C1|C|2627
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain CN
- General negative regulator of transcription subunit 5
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LT
- Large ribosomal subunit protein eL21A
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- Large ribosomal subunit protein eL42A
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