IL_8K82_132
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAACG*UUG
- Length
- 8 nucleotides
- Bulged bases
- 8K82|1|C1|U|3259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_132 not in the Motif Atlas
- Homologous match to IL_8C3A_133
- Geometric discrepancy: 0.0819
- The information below is about IL_8C3A_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60154.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8K82|1|C1|C|3225
8K82|1|C1|A|3226
8K82|1|C1|A|3227
8K82|1|C1|C|3228
8K82|1|C1|G|3229
*
8K82|1|C1|U|3258
8K82|1|C1|U|3259
8K82|1|C1|G|3260
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LM
- Large ribosomal subunit protein eL14A
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain Lf
- Large ribosomal subunit protein eL33A
Coloring options: