IL_8K82_154

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_154 not in the Motif Atlas

Geometric match to IL_6RA4_002

Geometric discrepancy: 0.1212

The information below is about IL_6RA4_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8K82|1|C2|U|150
8K82|1|C2|G|151
8K82|1|C2|U|152
*
8K82|1|C2|A|162
8K82|1|C2|G|163
8K82|1|C2|A|164

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SY

40S ribosomal protein S24-A