IL_8K82_155

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_155 not in the Motif Atlas

Homologous match to IL_8C3A_404

Geometric discrepancy: 0.2061

The information below is about IL_8C3A_404

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8K82|1|C2|C|186
8K82|1|C2|G|187
8K82|1|C2|A|188
8K82|1|C2|C|189
*
8K82|1|C2|G|196
8K82|1|C2|A|197
8K82|1|C2|A|198
8K82|1|C2|G|199

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A