IL_8K82_164
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 8K82|1|C2|U|380
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_164 not in the Motif Atlas
- Homologous match to IL_8C3A_412
- Geometric discrepancy: 0.0708
- The information below is about IL_8C3A_412
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49054.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C2|G|363
8K82|1|C2|G|364
8K82|1|C2|G|365
*
8K82|1|C2|C|376
8K82|1|C2|G|377
8K82|1|C2|A|378
8K82|1|C2|U|379
8K82|1|C2|U|380
8K82|1|C2|C|381
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4-A
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SX
- 40S ribosomal protein S23-A
Coloring options: