IL_8K82_173

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

8K82|1|C2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_173 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.2818

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8K82|1|C2|G|514
8K82|1|C2|A|515
8K82|1|C2|G|516
*
8K82|1|C2|C|536
8K82|1|C2|G|537
8K82|1|C2|A|538
8K82|1|C2|G|539
8K82|1|C2|G|540
8K82|1|C2|A|541
8K82|1|C2|A|542
8K82|1|C2|C|543

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A