IL_8K82_186

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACGUUU*AUCGU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K82|1|C2|A|817
8K82|1|C2|C|818
8K82|1|C2|G|819
8K82|1|C2|U|820
8K82|1|C2|U|821
8K82|1|C2|U|822
*
8K82|1|C2|A|850
8K82|1|C2|U|851
8K82|1|C2|C|852
8K82|1|C2|G|853
8K82|1|C2|U|854

Current chains

Chain C2

18S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain SH

40S ribosomal protein S7-A